The 72nd Annual Conference on Mass Spectrometry, Japan
Date:
Mon, Jun 10, - Wed, Jun 12, 2024
Venue:
Tsukuba International Congress Center (Takezono, Tsukuba City, Ibaraki Prefecture 305-0032, Japan)
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Abstract

Poster Presentations

Day 2, June 11(Tue.)  Room P1 (Multipurpose Hall)・Room P2 (Conference Room 101+102)

2P-31(3B-O1-0915)
PDF

Development of a Proteomics Separation Platform Using HILIC/MS/MS

(1Kyoto Univ., 2NIBIOHN)
oEisuke Kanao1,2, Koshin Akamatsu1, Jun Adachi1,2, Yasushi Ishihama1,2

Hydrophilic Interaction Chromatography (HILIC) coupled with liquid chromatography/tandem mass spectrometry (LC/MS/MS) is a promising technique for bottom-up proteomics. HILIC utilizes a high organic content solvent for the mobile phase, improving the MS sensitivity and throughput. Despite the potential, challenges in peptide separation robustness hinder practical application. To address this, a Two-step dissolution method was developed, optimizing peptide solubility with 25% ACN followed by adjusting to a final 95% ACN concentration. This approach significantly enhanced robustness, leading to the identification of over 1,200 proteins—20% more than conventional methods. The Two-step dissolution method demonstrated high reproducibility, suggesting its potential to improve the robustness of HILIC/MS/MS-based bottom-up proteomics.